Point Splatting codes

Compile GLviz
[1] code https://github.com/sebastianlipponer/glviz

     error: storage size of ‘shell_surface_listener’ isn’t known
 static const struct wl_shell_surface_listener shell_surface_listener = {


      solution: add #include "wayland-client-protocol.h" in SDL_waylandwindow.c


Not able to make successfully - undefined reference to symbol 'XCreateBitmapFromData'
add into extern/anttweakbar/CMakeLists.txt after set_target_properties(anttweakbar ... )

if (UNIX)
    target_link_libraries(anttweakbar X11)
endif()


Based on GLViz
[2] Surface Splatting code https://github.com/sebastianlipponer/surface_splatting

      error: storage size of ‘shell_surface_listener’ isn’t known
 static const struct wl_shell_surface_listener shell_surface_listener = {


      solution: add #include "wayland-client-protocol.h" in SDL_waylandwindow.c

Not able to make successfully - undefined reference to symbol 'XCreateBitmapFromData'
add into extern/anttweakbar/CMakeLists.txt after set_target_properties(anttweakbar ... )

if (UNIX)
    target_link_libraries(anttweakbar X11)
endif()

DualSPHysics Compile

Resources:
[1] code https://github.com/DualSPHysics/DualSPHysics
[2] scripts to execute models https://github.com/fincahuanaco/DualSPHysicsScripts

[3] https://dual.sphysics.org/index.php/downloads/
[4] https://dual.sphysics.org/files/3313/8753/4540/DualSPHysics_v3.0_GUIDE.pdf
[5] https://github.com/DualSPHysics/DualSPHysics/wiki/12.-Testcases#obc7

Update 2021

compile GPU version (CMakeLists.txt will find cuda, display ${CUDA_VERSION} to verify if is getting the right version).

See https://melhorum.blogspot.com/2021/03/cuda-8-on-linux18.html to install CUDA and requeriments.

on DualSPHysics/src/source

mkdir build

cd build

export CC=/usr/bin/gcc-5;CXX=/usr/bin/g++-5 #for cuda 8


export CC=/usr/bin/gcc-6;CXX=/usr/bin/g++-6 #for cuda 9

cmake ..

make In some cases you need to reduce cuda version to execute simulation. in case of GeForce GTX 460(with Driver Version: 390.59). I was forced to change from cuda9(supported) to cuda8(supported too) to execute simulations with around 360k particles.

Make Model

[1] https://www.freecadweb.org/

Latex tools

Resources:
[1] Mathpix https://snapcraft.io/mathpix-snipping-tool
                    https://snapcraft.io/install/mathpix-snipping-tool/ubuntu
[2]

Video file to gif animation

ffmpeg can create gif from mp4/mpeg file, but create low quality, for resolve this we need to create a palette for increase quality.

Create palette colors
$ffmpeg -i file.mpeg -vf fps=15,scale=-1:-1:flags=lanczos,palettegen  palette.png

Use palette for create gif from complete mp4 file
$ffmpeg -i file.mp4 -i palette.png -filter_complex "fps=15,scale=-1:-1:flags=lanczos[x];[x][1:v]paletteuse" out_full.gif

Use palette for create gif from mp4 file (from 0:55 and 9seconds)
$ffmpeg -ss 0:55 -t 9 -i file.mp4 -i palette.png -filter_complex "fps=15,scale=-1:-1:flags=lanczos[x];[x][1:v]paletteuse" out_fraction.gif

Without palette
$ffmpeg -i imagebind.mp4  -r 10 -f image2pipe -vcodec ppm - | convert -delay 5 -loop 0 - imagebind.gif


Convert png files list to mp4 (two ways)

$avconv -r 20 -i buffer/plot%d.png -b:v 4000k animation_h1.mp4

$ffmpeg -i buffer/plot%d.png -r 20 -b 4M animation_h2.mp4

Convert jpg files into mp4
$ffmpeg -framerate 1 -i frames/f%d.jpg -r 2 -pix_fmt yuv420p video.mp4
$ffmpeg -framerate 10 -i Dragon.%04d.png -r 2 -pix_fmt yuv420p video.mp4



Cut/Extract video fraction same quality no filter/codec
$ffmpeg -ss 3:19 -t 4 -i Moana_WaterFX.mp4 -vcodec copy -acodec copy Moana_f3.mp4

Convert mp4 to gif using palette and resizing
$ffmpeg -i psplat2_4k.mp4 -i palette_psplat2_4k.png -filter_complex "fps=15,scale=-1:-1:flags=lanczos[x];[x][1:v]paletteuse" -s 346x264 psplat2_4k.gif

$ffmpeg -i fluidhoudini.mp4 -i palette.png -filter_complex "fps=15,scale=-1:-1:flags=lanczos[x];[x][1:v]paletteuse" -s 640x480 fluidhoudini_palette_640.gif



Crop image video
To crop a 528×336 section, starting from position (264, 30):

ffmpeg -i first_256.mp4 -filter:v "crop=528:336:264:30" -c:a copy first_256_crop.mp4 

#ffmpeg -i in.mp4 -filter:v "crop=out_w:out_h:x:y" out.mp4

Error on Image Magick (convert) 

convert-im6.q16: cache resources exhausted

open file /etc/ImageMagick-6/policy.xml and change

<policy domain="resource" name="disk" value="1GiB"/>

To

<policy domain="resource" name="disk" value="8GB"/>

Or

<!-- disable ghostscript format types -->
<policy domain="coder" rights="none" pattern="PS" />
<policy domain="coder" rights="none" pattern="EPS" />
<policy domain="coder" rights="none" pattern="PDF" /> <------- Here!!
<policy domain="coder" rights="none" pattern="XPS" />

To

<policy domain="coder" rights="read | write" pattern="PDF" /> 

#Change by code


sed -i -E 's/name="memory" value=".+"/name="memory" value="1GiB"/g' /etc/ImageMagick-6/policy.xml
sed -i -E 's/name="map" value=".+"/name="map" value="1GiB"/g' /etc/ImageMagick-6/policy.xml
sed -i -E 's/name="area" value=".+"/name="area" value="1GiB"/g' /etc/ImageMagick-6/policy.xml
sed -i -E 's/name="disk" value=".+"/name="disk" value="4GiB"/g' /etc/ImageMagick-6/policy.xml

Recommended resolution & aspect ratios

For the default 16:9 aspect ratio, encode at these resolutions:

• 2160p: 3840x2160
• 1440p: 2560x1440
• 1080p: 1920x1080
• 720p: 1280x720
• 480p: 854x480
• 360p: 640x360
• 240p: 426x240

Online tools

[1] Crop gifs https://ezgif.com

Ubuntu 16 - VMWare Player 12 - GCC Not found

First solution
cd /usr/lib/vmware/modules/source 
wget https://github.com/mkubecek/vmware-host-modules/archive/player-12.5.9.zip 
unzip player-12.5.9.zip 
cd vmware-host-modules-player-12.5.9/vmmon-only/ 
make 
cd ../vmnet-only/ 
make 
cd .. 
mkdir /lib/modules/`uname -r`/misc 
cp vmmon.o /lib/modules/`uname -r`/misc/vmmon.ko 
cp vmnet.o /lib/modules/`uname -r`/misc/vmnet.ko 
depmod -a /etc/init.d/vmware restart


Second solution

mkdir ~/vmmodules #create a temp folder and copy files.
cp /usr/lib/vmware/modules/source/vmnet.tar /usr/lib/vmware/modules/source/vmmon.tar ~/vmmodules/ 
# make the modules manually 
tar -xvf vmmon.tar 
cd vmmon-only 
make 
cd .. 
sudo cp vmmon.o /lib/modules/`uname -r`/kernel/drivers/misc/vmmon.ko.gz 
tar -xvf vmnet.tar 
cd vmnet-only 
make 
cd .. 
sudo cp vmnet.o /lib/modules/`uname -r`/kernel/drivers/misc/vmnet.ko.gz 
#Then reload the modules and restart vmware service, vmplayer should works now. 
sudo depmod -a 
sudo systemctl restart vmware


Thrid solution

#install the right version of gcc
$sudo apt-get install g++-4.9 

Trick

$sudo sed 's/gcc version 5.4.0/gcc version 6.4.0/' /proc/version > /tmp/version
$sudo mount --bind /tmp/version /proc/version
$sudo vmware-modconfig --console --install-all
$sudo umount /proc/version && rm /tmp/version

Final solution 2019
Update kernel from 4.4 to 4.11 works good[2] and download from [3].

References:
[1] https://unix.stackexchange.com/questions/310637/vmware-kernel-module-a-compatible-version-of-gcc-was-not-found
[2] Update kernel https://www.howtoforge.com/tutorial/how-to-upgrade-linux-kernel-in-ubuntu-1604-server/
[3] Ubuntu kernels https://kernel.ubuntu.com/~kernel-ppa/mainline/
[4] Update Ubuntu 18 kernel https://www.tecmint.com/upgrade-kernel-in-ubuntu/ 

Stream Music from your Linux PC to Android Cellphone Speaker

1) SoundWire

2) WiFiAudio Server for Linux 64bit

References:
[1] Client https://appuals.com/stream-audio-pc-android-device/
[2] Server http://georgielabs.net/
[3] http://wifiaudio.boards.net/thread/2/wifiaudio-support-links-download-application
[4] WifiAudio Sever Linux 64bits http://wifiaudio.boards.net/attachment/download/6

Ubuntu route (s)

ip route list

route

route add -net 10.0.0.0 netmask 255.0.0.0 gw 10.169.5.1



sudo route del -net 192.168.76.0/24
and
sudo route del -net 192.168.76.0 netmask 255.255.255.0


References:
[1] https://www.cyberciti.biz/faq/linux-route-add/

Linux Discovery ports

Mac
sudo lsof -iTCP -sTCP:LISTEN


Linux
List used ports 
$netstat -tulpn | grep LISTEN

tcp        0      0 127.0.0.1:5939          0.0.0.0:*               LISTEN      -                  
tcp        0      0 127.0.0.53:53           0.0.0.0:*               LISTEN      -                  
tcp        0      0 0.0.0.0:22              0.0.0.0:*               LISTEN      -                  
tcp        0      0 127.0.0.1:631           0.0.0.0:*               LISTEN      -                  
tcp6       0      0 :::80                   :::*                    LISTEN      -                  
tcp6       0      0 :::22                   :::*                    LISTEN      -                  
tcp6       0      0 ::1:631                 :::*                    LISTEN      -

List process that using port
You like to knows who is using port 80, then

$sudo lsof -i :80
apache2   965     root    4u  IPv6  26650      0t0  TCP *:http (LISTEN)
apache2 13794 www-data    4u  IPv6  26650      0t0  TCP *:http (LISTEN)
apache2 13795 www-data    4u  IPv6  26650      0t0  TCP *:http (LISTEN)
apache2 13796 www-data    4u  IPv6  26650      0t0  TCP *:http (LISTEN)
apache2 13797 www-data    4u  IPv6  26650      0t0  TCP *:http (LISTEN)
apache2 13798 www-data    4u  IPv6  26650      0t0  TCP *:http (LISTEN)


Second option

$sudo netstat -peanut | grep ":80"
tcp6       0      0 :::80                   :::*                    LISTEN      0          26650      965/apache2

Setting apache
$vi /etc/apache2/apache2.conf

#       /etc/apache2/
#       |-- apache2.conf
#       |       `--  ports.conf
#       |-- mods-enabled
#       |       |-- *.load
#       |       `-- *.conf
#       |-- conf-enabled
#       |       `-- *.conf
#       `-- sites-enabled
#               `-- *.conf

PostgreSQL 8.4 en CentOS

1) Deshabilitar repositorios

#vi /etc/yum.repos.d/CentOS-Base.repo

agregar la siguiente linea a [base] y [updates]
exclude=postgresql*

2) Añadir los repositorios de PostgreSQL 8.4
Descargar el rpm apropiado desde http://yum.pgsqlrpms.org/reporpms/repoview/pgdg-centos.html

#wget http://yum.pgsqlrpms.org/reporpms/8.4/pgdg-centos-8.4-2.noarch.rpm
#rpm -ivh pgdg-centos-8.4-2.noarch.rpm (este archivos es el que descargamos)

3) Instalar PostgreSQL

3.1 verifique version
#yum list postgresql*

#yum install postgresql postgresql-server

3.1 Error probable de dependencia a apr-util
#yum install apr-util
#yum install postgresql postgresql-server

4) Arrancar el servidor y habilitar conexiones remotas

#service postgresql initdb
#service postgresql start

5) Configurar Accesos en /var/lib/pgsql/data/
5.1 pg_hba.conf
host all all 0.0.0.0/0 trust   #no need password , use md5
5.2 postgresql.conf
listen_addresses='*'
port=5432
max_connections=100
superuser_reserved_connections=5

6) Reinicia servicio
#/etc/init.d/postgresql restart


Referencias
[0] Postgres 9.1 http://wiki.postgresql.org/wiki/YUM_Installation
[1] Auto Start/Stop http://www.michaelhinds.com/tech/linux/install-postgres.html
[2] http://www.ixavi.com/2010/01/instalar-postgresql-8-3-en-centos-desde-yum/

Linux root password reset

Mode 1:Recover mode

In recover mode try to remount and after that change password

mount -o remount,rw /
 
Mode 2: Using live

mkdir /mnt/recover
mount /dev/sda2 /mnt/recover
 
chroot /mnt/recover
 
passwd  #or
passwd user 
exit
umount /mnt/recover

Other way : Using files(for root or any user)
 
 /etc/passwd
 /etc/shadow
  
root:x:0:0:root:/root:/bin/bash
to
root::0:0:root:/root:/bin/bash 

References:

[1] http://www.microhowto.info/howto/reset_a_forgotten_root_password_using_a_live_distribution.html

[2] https://www.computersecuritystudent.com/UNIX/UBUNTU/1204/lesson5/index.html

Ubuntu users

#adduser username

#usermod -aG sudo username

$su - username

$whoami

$sudo whoami   

Examples to use

$fdisk -l

$sudo fdisk -l

$sudo ls -l /root



Sunat Servicios Web

Resources:
[1] Code perl http://cpan.dei.uc.pt/authors/id/G/GP/GPAREDES/SUNAT/SEE.pm

[2] http://orientacion.sunat.gob.pe/index.php/empresas-menu/comprobantes-de-pago-empresas/comprobantes-de-pago-electronicos-empresas/see-desde-los-sistemas-del-contribuyente/guias-manuales-y-servicios-web

Linux Discover Teamviewer id

$sudo grep -n id /home/user/.local/share/teamviewer14/logfiles/TeamViewer14_Logfile.log

$whereis teamviewer
$/usr/bin/teamviewer help
$/usr/bin/teamviewer info #for get id too

$/usr/bin/teamviewer daemon stop
$/usr/bin/teamviewer setup
$/usr/bin/teamviewer daemon status
$/usr/bin/teamviewer daemon start

References:
[1] http://www.tonisoto.com/2013/07/launching-teamviewer-remotely-throught-ssh/

Ubuntu Apache Django settings

References:
[1] main https://www.digitalocean.com/community/tutorials/how-to-serve-django-applications-with-apache-and-mod_wsgi-on-ubuntu-16-04

[2] https://coderwall.com/p/ooerda/python-django-apache-ubuntu
[3] https://www.digitalocean.com/community/tutorials/how-to-serve-django-applications-with-apache-and-mod_wsgi-on-debian-8

Fixing geopandas and osmnx problem: Could not find libspatialindex_c library file

For secondary problem trying to resolve (trying to find the library i got):
Traceback (most recent call last):
  File "", line 1, in
NameError: name 'find_library' is not defined
The solution is:

import ctypes
from ctypes.util import find_library

When you install environment and install geopandas, rtree and osmnx

pip install git+git://github.com/geopandas/geopandas.git

pip install rtree

pip install osmnx

No error, everythong aparently is ok, and you try to test

$python

>>> import rtree
Traceback (most recent call last):
 File "", line 1, in
 File "/var/www/sampleapp/crivist/myEnv/lib/python3.5/site-packages/rtree/__init__.py", line 1, in
   from .index import Rtree
 File "/var/www/sampleapp/crivist/myEnv/lib/python3.5/site-packages/rtree/index.py", line 5, in
   from . import core
 File "/var/www/sampleapp/crivist/myEnv/lib/python3.5/site-packages/rtree/core.py", line 125, in
   raise OSError("Could not find libspatialindex_c library file")
OSError: Could not find libspatialindex_c library file

You can solve using:
sudo apt install python3-rtree
But in some servers, you can't access to apt, then you decide do next commands:

$git clone https://github.com/libspatialindex/libspatialindex.git
$cd libspatialindex
$cmake --prefix=/usr .
$make
$sudo make install  #You cannot install on system

CMake Error at src/cmake_install.cmake:52 (file):
  file INSTALL cannot copy file
  "/home/fincahuanaco/Temp/libspatialindex/bin/libspatialindex.so.5.0.0" to
  "/usr/local/lib/libspatialindex.so.5.0.0".
Call Stack (most recent call first):
  cmake_install.cmake:42 (include)

But you compile, then you have the link to file, then set next variable

export SPATIALINDEX_C_LIBRARY=environmentpath/lib/libspatialindex_c.so


Enjoy

References:
[1] geopandas http://geopandas.org/install.html
[2] python environment https://docs.python-guide.org/dev/virtualenvs/
[3] python environment 2 https://docs.python.org/3/tutorial/venv.html

Latex On Line

Latex online

[1] Single/public https://www.papeeria.com

[2] Latex/R/Python/Octave/Julia/Shell/GPU https://cocalc.com/

[3] Single Latex & Octave http://www.verbosus.com/  #limit 4 resources

[4] Quick snap code to image quicklatex.com

 

Over google docs
http://docs.latexlab.org/


Single Compiler
[1] http://latex.informatik.uni-halle.de/latex-online/latex.php
[2] http://sciencesoft.at/latex/flatex.gsp?lang=en

After register
Unlimited https://www.sharelatex.com/
Monkey http://monkeytex.bradcater.webfactional.com/


 



Others References
[1] http://tex.stackexchange.com/questions/3/compiling-documents-online
[2] http://texblog.net/latex-link-archive/online-compiler/

Ubuntu VPN

References:

[1] https://www.digitalocean.com/community/tutorials/how-to-set-up-an-openvpn-server-on-ubuntu-16-04

[2] Setting clients https://www.utwente.nl/en/lisa/ict/manuals/network/vpn/openvpn-ubuntu-en/

Fedora 23 - Executing MONO Asp.NET MVC App

Table 'mysql.user' doesn't exist:ERROR
Or
ERROR 1146 (42S02): Table 'mysql.role_edges' doesn't exist

$mysql_upgrade -u root

Access problem (resolve inner mysql)

$mysql -u root -p
>show GRANTS FOR onepoint@localhost;


Execution problem



Turns out simply creating the folder using mkdir

$sudo mkdir /etc/mono/registry
$sudo chmod uog+rw /etc/mono/registry # setting the right permissions

Another way

You can set MONO_REGISTRY_PATH to point to a directory that you control:

$mkdir my-registry
$MONO_REGISTRY_PATH=`pwd`/my-registry
$xsp4

 

Next problem

System.MissingMethodException Method 'RouteCollection.get_AppendTrailingSlash' not found.




[uxxx@sxxx MaxxCoreWeb]$ mono --version
Mono JIT compiler version 4.0.5 (Stable 4.0.5.1/1d8d582 Mon Jan  4 11:09:45 UTC 2016)




These message showed because the system was build in mono 4.5 and mono 4.2 (both are compatible
for me in my system), but in my case i installed mono 4, lastest on Fedora 23.


Command for update repository to Fedora 27, but after update still doesn't ran
 

$rpm --import "https://keyserver.ubuntu.com/pks/lookup?op=get&search=0x3FA7E0328081BFF6A14DA29AA6A19B38D3D831EF"
$su -c 'curl https://download.mono-project.com/repo/centos7-stable.repo | tee /etc/yum.repos.d/mono-centos7-stable.repo'
$dnf update

I removed mono and tried to install mono 5, mono 4.8 and mono 4.2, but i got error of conflicts. Then i executed next command:

$sudo dnf autoremove #for remove dependences


And tried again and was successful.

$ sudo dnf install mono-complete-4.8.1.0-0.xamarin.1.x86_64




References:
[1] Upgrade tips https://fedoraproject.org/wiki/DNF_system_upgrade
[2] mono https://www.mono-project.com/download/stable/#download-lin-fedora

Fedora 23 Services

$systemctl status sshd.service
$systemctl enable httpd.service
$systemctl disable service_name.service

$systemctl start service_name.service

$systemctl stop service_name.service 

$systemctl restart service_name.service

$systemctl list-units --type=service 

References:
[1] General info https://docs.fedoraproject.org/en-US/fedora/rawhide/system-administrators-guide/infrastructure-services/Services_and_Daemons/
[2] List services https://docs.fedoraproject.org/en-US/Fedora/15/html/Deployment_Guide/s1-services-running.html
 

 

Fedora 29 mySQL

$sudo dnf install https://dev.mysql.com/get/mysql80-community-release-fc29-1.noarch.rpm

$sudo dnf --disablerepo=mysql80-community --enablerepo=mysql57-community install mysql-community-server


works too for Fedora 23 (Server Edition)

Problems
$ mysql -u root
ERROR 1045 (28000): Access denied for user 'root'@'localhost' (using password: NO)

$ sudo grep 'temporary password' /var/log/mysqld.log


Referencias:
[1] https://www.if-not-true-then-false.com/2010/install-mysql-on-fedora-centos-red-hat-rhel/